Microtubule - the little engine that could

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Microtubules: the basics
Microtubules are major components of the cytoskeleton. They are found in all eukaryotic cells, and they are involved in mitosis, cell motility, intracellular transport, and maintenance of cell shape. Microtubules are composed of alpha- and beta-tubulin subunits assembled into linear protofilaments. A single microtubule contains 10 to 15 protofilaments (13 in mammalian cells) that wind together to form a 24 nm wide hollow cylinder. Microtubules are structures that can rapidly grow (via polymerization) or shrink (via depolymerization) in size, depending on how many tubulin molecules they contain.

The cytoskeleton of eukaryotic cells is made of filamentous proteins, and it provides mechanical support to the cell and its cytoplasmic constituents. All cytoskeletons consist of three major classes of elements that differ in size and in protein composition. Microtubules are the largest type of filament, with a diameter of about 25 nanometers (nm), and they are composed of a protein called tubulin. Actin filaments are the smallest type, with a diameter of only about 6 nm, and they are made of a protein called actin. Intermediate filaments, as their name suggests, are mid-sized, with a diameter of about 10 nm. Unlike actin filaments and microtubules, intermediate filaments are constructed from a number of different subunit proteins.

Tubulin contains two polypeptide subunits, and dimers of these subunits string together to make long strands called protofilaments. Thirteen protofilaments then come together to form the hollow, straw-shaped filaments of microtubules. Microtubules are ever-changing, with reactions constantly adding and subtracting tubulin dimers at both ends of the filament (Figure 1). The rates of change at either end are not balanced — one end grows more rapidly and is called the plus end, whereas the other end is known as the minus end. In cells, the minus ends of microtubules are anchored in structures called microtubule organizing centers (MTOCs). The primary MTOC in a cell is called the centrosome, and it is usually located adjacent to the nucleus.

Microtubules tend to grow out from the centrosome to the plasma membrane. In nondividing cells, microtubule networks radiate out from the centrosome to provide the basic organization of the cytoplasm, including the positioning of organelles.

The protein actin is abundant in all eukaryotic cells. It was first discovered in skeletal muscle, where actin filaments slide along filaments of another protein called myosin to make the cells contract. (In nonmuscle cells, actin filaments are less organized and myosin is much less prominent.) Actin filaments are made up of identical actin proteins arranged in a long spiral chain. Like microtubules, actin filaments have plus and minus ends, with more ATP-powered growth occurring at a filament's plus end (Figure 2).

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Figure 2.

In many types of cells, networks of actin filaments are found beneath the cell cortex, which is the meshwork of membrane-associated proteins that supports and strengthens the plasma membrane. Such networks allow cells to hold — and move — specialized shapes, such as the brush border of microvilli. Actin filaments are also involved in cytokinesis and cell movement (Figure 3).

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Figure 3: Actin filaments support a variety of structures in a cell.
© 2014 Nature Education All rights reserved.

Intermediate filaments come in several types, but they are generally strong and ropelike. Their functions are primarily mechanical and, as a class, intermediate filaments are less dynamic than actin filaments or microtubules. Intermediate filaments commonly work in tandem with microtubules, providing strength and support for the fragile tubulin structures.

All cells have intermediate filaments, but the protein subunits of these structures vary. Some cells have multiple types of intermediate filaments, and some intermediate filaments are associated with specific cell types. For example, neurofilaments are found specifically in neurons (most prominently in the long axons of these cells), desmin filaments are found specifically in muscle cells, and keratins are found specifically in epithelial cells. Other intermediate filaments are distributed more widely. For example, vimentin filaments are found in a broad range of cell types and frequently colocalize with microtubules. Similarly, lamins are found in all cell types, where they form a meshwork that reinforces the inside of the nuclear membrane. Note that intermediate filaments are not polar in the way that actin or tubulin are (Figure 4).

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Figure 4. The structure of intermediate filaments.
Intermediate filaments are composed of smaller strands in the shape of rods. Eight rods are aligned in a staggered array with another eight rods, and these components all twist together to form the rope-like conformation of an intermediate filament. © 2014 Nature Education All rights reserved.
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Cytoskeletal filaments provide the basis for cell movement. For instance, cilia and (eukaryotic) flagella move as a result of microtubules sliding along each other. In fact, cross sections of these tail-like cellular extensions show organized arrays of microtubules.

Other cell movements, such as the pinching off of the cell membrane in the final step of cell division (also known as cytokinesis) are produced by the contractile capacity of actin filament networks. Actin filaments are extremely dynamic and can rapidly form and disassemble. In fact, this dynamic action underlies the crawling behavior of cells such as amoebae. At the leading edge of a moving cell, actin filaments are rapidly polymerizing; at its rear edge, they are quickly depolymerizing (Figure 5). A large number of other proteins participate in actin assembly and disassembly as well.

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Figure 5. Cell migration is dependent on different actin filament structures.
(A) In a cell, motility is initiated by an actin-dependent protrusion of the cell’s leading edge, which is composed of armlike structures called lamellipodia and filopodia. These protrusive structures contain actin filaments, with elongating barbed ends orientated toward the plasma membrane. (B) During cellular arm extension, the plasma membrane sticks to the surface at the leading edge. (C) Next, the nucleus and the cell body are pushed forward through intracellular contraction forces mediated by stress fibers. (D) Then, retraction fibers pull the rear of the cell forward. © 2008 Nature Publishing Group Mattila, P.K. & Lappalainen, P. Filopodia: molecular architecture and cellular functions. Nature Reviews Molecular Cell Biology 9, 446-454 (2008). All rights reserved.

See: https://www.nature.com/scitable/topicpage/microtubules-and-filaments-14052932/

The cytoskeleton of a cell is made up of microtubules, actin filaments, and intermediate filaments. These structures give the cell its shape and help organize the cell's parts. In addition, they provide a basis for movement and cell division.
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I believe that consciousness is no more than an evolved response-ability to sensory and biochemical stimulus.

When a Mimosa or a Venus flytrap reacts to an external disturbance is that an expression of sensory awareness?

At what point does an organism experiencing a biochemical response become conscious of that response?
Is that not just another example of evolutionary refinement of a basic chemical interaction.

Autocatalytic chemical networks at the origin of metabolism
Joana C. Xavier, Wim Hordijk, Stuart Kauffman, Mike Steel, and William F. Martin
Published:11 March 2020

Cells are autocatalytic in that they require themselves for reproduction. The origin of the first cells from the elements on the early Earth roughly 4 billion years ago [1–4] must have been stepwise. The nature of autocatalytic systems as intermediate states in that process is of interest. Autocatalytic sets are simpler than cellular metabolism and produce copies of themselves if growth substrates for food and a source of chemical energy for thermodynamic thrust are provided [5–7].
In theory, sets of organic molecules should be able to form autocatalytic systems [8–12], which, if provided with a supply of starting ‘food' molecules, can emerge spontaneously and proliferate via constraints imposed by substrates, catalysts, or thermodynamics [13].

Autocatalytic sets have attracted considerable interest as transitory intermediates between chemical systems and genetically encoded proteins at the origin of life [13–17]. Preliminary studies have shown that coenzymes are often required for their own synthesis and are therefore replicators with autocatalytic properties [18]. However, autocatalytic networks have not been identified in non-enzymatic metabolic networks so far, and evidence for their existence during prebiotic evolution is lacking.
When the autocatalytic process of a metabolic function goes wrong, this activates another biochemical response of neural discomfort (pain, nausea).

Are the properties of life and consciousness not evolved refinements of sensory awareness and the production of action potentials in response to interaction of information?

Autocatalytic Networks at the Basis of Life’s Origin and Organization
Wim Hordijk1,* and Mike Steel2

Life is more than the sum of its constituent molecules. Living systems depend on a particular chemical organization, i.e., the ways in which their constituent molecules interact and cooperate with each other through catalyzed chemical reactions. Several abstract models of minimal life, based on this idea of chemical organization and also in the context of the origin of life, were developed independently in the 1960s and 1970s.
These models include hypercycles, chemotons, autopoietic systems, (M,R)-systems, and autocatalytic sets. We briefly compare these various models, and then focus more specifically on the concept of autocatalytic sets and their mathematical formalization,
RAF theory.
We argue that autocatalytic sets are a necessary (although not sufficient) condition for life-like behavior. We then elaborate on the suggestion that simple inorganic molecules like metals and minerals may have been the earliest catalysts in the formation of prebiotic autocatalytic sets, and how RAF theory may also be applied to systems beyond chemistry, such as ecology, economics, and cognition.
Keywords: autocatalytic sets, chemical organization, RAF theory, origin of life

It seems to me that sensory awareness is a highly evolved system of autocatalytic processes that is being monitored and regulated by the homeostatic control systems. It seems plausible that this process has evolved into a sensory aware and eventual conscious experience.
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